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Showing :
biomart
•
reset
0
votes
0
replies
49
views
News:
Ensembl 116 / Ensembl Genomes 63 have been released - a milestone for BioMart
ensembldb
biomart
mart
ensembl
6 days ago
Ensembl_Jorge
▴ 10
2
votes
4
replies
768
views
Converting Probe IDs to HGNC symbols
Annotation
biomaRt
GEOquery
written 5 months ago by
Manav
▴ 10
0
votes
5
replies
3.8k
views
Ensembl site unresponsive via biomaRt
biomaRt
written 15 months ago by
hebda
• 0
1
vote
2
replies
832
views
News:
Upcoming Ensembl API and data access changes - new blog post available
ensembl
mart
biomaRt
ensembldb
6 months ago • updated 6 days ago
Ensembl_Jorge
▴ 10
0
votes
1
reply
695
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 7 months ago by
Kevin Blighe
★ 4.0k • written 9 months ago by
Jesus
• 0
5
votes
3
replies
1.3k
views
Issues with downloading biomaRt - SeqInfo and S4 Vectors
S4Vectors
biomaRt
Seqinfo
updated 7 months ago by
James W. MacDonald
68k • written 7 months ago by
mgray20
▴ 10
0
votes
3
replies
1.1k
views
News:
Ensembl 115 has been released!
ensembl
ensembldb
biomaRt
9 months ago • updated 6 days ago
Ensembl_Jorge
▴ 10
1
vote
3
replies
1.9k
views
News:
Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt
ensembldb
written 13 months ago by
Aleena_Ensembl
▴ 30
1
vote
1
reply
835
views
Biomart server error
biomaRt
BioMartGOGeneSets
updated 12 months ago by
James W. MacDonald
68k • written 12 months ago by
tarek.mohamed
• 0
0
votes
3
replies
1.1k
views
getBM from biomaRt inconsistencies found with .gtf files across multiple species
.gtf
biomaRt
Ensembl
updated 15 months ago by
Mike Smith
★ 6.6k • written 15 months ago by
Benjamin
▴ 20
3
votes
5
replies
3.1k
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma
edgeR
biomaRt
updated 17 months ago by
James W. MacDonald
68k • written 17 months ago by
Jonathan
▴ 10
0
votes
2
replies
3.2k
views
Error using useMart or useEnsembl
biomaRt
updated 17 months ago by
James W. MacDonald
68k • written 17 months ago by
rayanelkholdi
• 0
0
votes
4
replies
3.2k
views
Biomart and ensembl not working?
ensembldb
biomaRt
updated 17 months ago by
James W. MacDonald
68k • written 17 months ago by
Zuzer
• 0
3
votes
9
replies
3.8k
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi
EnsDb.Mmusculus.v79
biomaRt
org.Mm.eg.db
updated 16 months ago by
franknappi14
• 0 • written 17 months ago by
Nicholas
• 0
4
votes
9
replies
3.6k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus
biomaRt
updated 18 months ago by
James W. MacDonald
68k • written 20 months ago by
Benjamin
▴ 20
0
votes
0
replies
1.4k
views
News:
Ensembl 113 has been released
ensembl
ensembldb
mart
biomaRt
20 months ago
Ensembl_Jorge
▴ 10
0
votes
1
reply
1.2k
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 21 months ago by
Mike Smith
★ 6.6k • written 21 months ago by
Abiologist
• 0
2
votes
2
replies
2.0k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
21 months ago
2044291597
• 0
1
vote
3
replies
2.4k
views
502 error biomaRt getLDS()
ensembldb
biomaRt
updated 21 months ago by
James W. MacDonald
68k • written 2.4 years ago by
Pez
▴ 10
1
vote
4
replies
2.7k
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN
biomaRt
updated 19 months ago by
Adam
• 0 • written 22 months ago by
varga.luca
• 0
1
vote
4
replies
2.1k
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
22 months ago
kschecht
• 0
2
votes
8
replies
4.9k
views
biomaRt getLDS error
biomaRt
22 months ago
mark.dunning
▴ 20
1
vote
2
replies
1.8k
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
24 months ago
Svitlana
▴ 10
0
votes
0
replies
812
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
2.0 years ago
Reese
• 0
0
votes
2
replies
1.3k
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db
biomaRt
2.1 years ago
landenshanie
▴ 40
0
votes
0
replies
741
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets
allele_freq
biomaRt
getBM
2.1 years ago
Abiologist
• 0
1
vote
0
replies
1.4k
views
News:
Ensembl 112 has been released.
ensembldb
biomaRt
ensemblrelease
2.1 years ago
Aleena_Ensembl
▴ 30
1
vote
3
replies
1.1k
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 2.2 years ago by
James W. MacDonald
68k • written 2.2 years ago by
bas_work
▴ 30
3
votes
2
replies
2.4k
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 2.2 years ago by
James W. MacDonald
68k • written 2.2 years ago by
sansan
• 0
0
votes
1
reply
1.3k
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 2.2 years ago by
James W. MacDonald
68k • written 2.2 years ago by
Reeya
• 0
0
votes
1
reply
2.2k
views
error in mapIds function
mapIds
biomaRt
updated 2.3 years ago by
Marcel Ramos
700 • written 2.3 years ago by
Regina
• 0
0
votes
2
replies
1.7k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
2.4 years ago
eefernan5
• 0
3
votes
3
replies
18k
views
How to find rsID with biomaRt in R
biomaRt
updated 2.4 years ago by
James W. MacDonald
68k • written 5.3 years ago by
Federica
▴ 10
0
votes
1
reply
888
views
biomaRt issue
biomaRt
updated 2.4 years ago by
Mike Smith
★ 6.6k • written 2.4 years ago by
Fariz
• 0
1
vote
5
replies
2.7k
views
BiomaRt download data error
biomaRt
updated 2.4 years ago by
Mike Smith
★ 6.6k • written 2.4 years ago by
Max Bone
• 0
6
votes
9
replies
5.1k
views
biomaRt has encountered an unknown server error.
biomaRt
host
useEnsembl
updated 2.4 years ago by
alexander3
• 0 • written 2.4 years ago by
Amparo
• 0
1
vote
1
reply
2.5k
views
Error with biomaRt
biomaRt
updated 2.4 years ago by
Mike Smith
★ 6.6k • written 2.4 years ago by
goldenboy
• 0
4
votes
2
replies
1.7k
views
Enrichement with clusterProfiler and biomart
biomaRt
clusterProfiler
Zea_mays
updated 2.4 years ago by
Guido Hooiveld
★ 4.1k • written 2.4 years ago by
sansan
• 0
2
votes
2
replies
1.8k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
2.4 years ago
bd2000
▴ 30
1
vote
0
replies
948
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
2.4 years ago
Benjamin
▴ 30
0
votes
2
replies
1.7k
views
Problem with loading ensembl version 105.
biomaRt
2.5 years ago
RC
• 0
0
votes
1
reply
2.5k
views
biomaRt_getBM_Failed to collect lazy table
getBM
biomaRt
updated 2.5 years ago by
James W. MacDonald
68k • written 2.5 years ago by
ai.yaku
• 0
0
votes
3
replies
2.7k
views
Obtaining rsIDs with ENSG and variant ID information
rsid
biomaRt
updated 2.6 years ago by
Robert Castelo
★ 3.4k • written 2.6 years ago by
bd2000
▴ 30
4
votes
12
replies
3.3k
views
Ensembl down???
biomaRt
2.6 years ago • updated 2.5 years ago
bas_work
▴ 30
3
votes
2
replies
1.5k
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
2.6 years ago
henrydionne
▴ 10
1
vote
2
replies
3.6k
views
How to find stop codons for a list of genes
stopcodon
biomaRt
2.6 years ago
Marek Gierlinski
▴ 30
0
votes
10
replies
2.4k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R
BioMart
biomaRt
2.6 years ago • updated 2.3 years ago
ScafioRuo
• 0
12
votes
10
replies
17k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 2.3 years ago by
juo5
• 0 • written 2.7 years ago by
Abhishek
▴ 20
0
votes
3
replies
1.6k
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 2.7 years ago by
Gordon Smyth
53k • written 2.7 years ago by
Marilyn
• 0
1
vote
4
replies
1.8k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
2.7 years ago
andrew.b.kleist
▴ 10
1,085 results • Page
1 of 22
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Comment: an unexplained phenomenon using variance stabilizing transformation for downstre
by
dandraarteaga
• 0
Day 1 of [The Freak Circus][1] determines whether you can continue playing the game or not. Choosing the wrong option will lead you straigh…
Comment: R for Mass Spectrometry: Precursor Scan Number lost when converting .wiff to .mz
by
dandraarteaga
• 0
If you press and hold for too long while playing [Geometry Dash][1], the robot will jump too high and miss the hidden path below. A single …
Comment: EuroBioC2023 abstract submission closing soon!
by
Trang
• 0
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Answer: timeout for archival source packge downloads (bioconductor package documentation
by
shepherl
4.3k
This has been resolved. EXCEPT: Download stats remain unavailable. The rest of the site and package downloads should be functioning as no…
Answer: timeout for archival source packge downloads (bioconductor package documentation
by
shepherl
4.3k
We are aware of intermittent latency and downtime with bioconductor.org and downloads of the current release and devel packages. We have op…
Votes
Answer: ExperimentHub resource EH1136 for FlowSorted.Blood.EPIC cannot be downloaded
Answer: timeout for archival source packge downloads (bioconductor package documentation
Answer: timeout for archival source packge downloads (bioconductor package documentation
A: plotMDS axis labels for limma/EdgeR: PCA or PCoA
Answer: How to stop "Update all/some/none? [a/s/n]:"
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