• Join/Login
  • Business Software
  • Open Source Software
  • For Vendors
  • Blog
  • About
  • More
    • Articles
    • Create
    • SourceForge Podcast
    • Site Documentation
    • Subscribe to our Newsletter
    • Support Request
SourceForge logo
For Vendors Help Create Join Login
SourceForge logo
Business Software
Open Source Software
SourceForge Podcast
Resources
  • Articles
  • Case Studies
  • Blog
Menu
  • Help
  • Create
  • Join
  • Login
  • Home
  • Open Source Software
  • Scientific/Engineering
  • Molecular Science
  • STochastic Engine for Pathway Simulation
STochastic Engine for Pathway Simulation

STochastic Engine for Pathway Simulation

Status: Beta
Brought to you by: stepsdev
8 Reviews
Downloads: 1 This Week
Last Update: 2018-04-27
Download
Share This
Email in envelope

Get an email when there's a new version of STochastic Engine for Pathway Simulation

Next
Linux
  • Summary
  • Files
  • Reviews
  • Support
  • Mailing Lists

Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes.

Please check our new repository: https://github.com/CNS-OIST/STEPS

Project Activity

See All Activity >

{{ this.obj.activity_extras.summary }}
{{/each}}

Categories

Molecular Science, Simulation, Chemistry, Bio-Informatics, Medical

License

GNU General Public License version 2.0 (GPLv2)

Follow STochastic Engine for Pathway Simulation

STochastic Engine for Pathway Simulation Web Site

Other Useful Business Software
Ditto Edge Server is a lightweight standalone server for resource-constrained edge environments, based on the core Ditto Edge SDK. Icon
Ditto Edge Server is a lightweight standalone server for resource-constrained edge environments, based on the core Ditto Edge SDK.

With Ditto Edge Server, you can join devices as small as a Raspberry Pi to a local mesh network and synchronize data across edge environments.

Ditto's Edge SDK is the only thing your edge devices need to ensure your application is operational in any environment, regardless of network conditions.
Learn More
Rate This Project
Login To Rate This Project

User Ratings

5.0 out of 5 stars
★★★★★
★★★★
★★★
★★
★
8
0
0
0
0
ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

User Reviews

Filter Reviews:
All
  • All
  • ★★★★★
  • ★★★★
  • ★★★
  • ★★
  • ★
  • suchitb Posted 2015-03-28
    Hello. I would really love to use this. Does anyone know if this works with Python 3.3? I ran into build errors. Then I installed Python 2.7.9 to see if it would work, but with this one I have run into issues around numpy not loading due to missing modules. So, I wanted to ask if it works with 3.3 and I missed some setting somewhere? Thank you.
  • tfileme Posted 2013-05-12
    Steps is perfect! Thanks.
    1 user found this review helpful.
  • emosim Posted 2013-03-20
    Good job! Thanks!
  • judithp Posted 2013-02-09
    It works. It supports pretty much everything you can think of. It doesn't crash in the hands of a casual user.
  • debblan Posted 2012-05-26
    Using this for the last 2 years. Best software available.
Read more reviews >

Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Healthcare Industry, Science/Research

Programming Language

C, C++, Python

Related Categories

Python Molecular Science Software, Python Simulation Software, Python Chemistry Software, Python Bio-Informatics Software, Python Medical Software, C++ Molecular Science Software, C++ Simulation Software, C++ Chemistry Software, C++ Bio-Informatics Software, C++ Medical Software, C Molecular Science Software, C Simulation Software, C Chemistry Software, C Bio-Informatics Software, C Medical Software

Registered

2007-09-06
Similar Business Software
  • Azore CFD
    Azore CFD
    AzoreCFD has been a trusted, cutting-edge software tool since 2007. Azore focuses on analysis, design, engineering, and on obtaining precise, and quick results. Customers use Azore for applications that include: industrial flows, aerodynamics, thermal mixing, conjugate heat transfer, gas species...
    See Software
  • SDS Manager
    SDS Manager
    SDS Manager is a leading provider of Safety Data Sheet (SDS) management systems, offering one of the largest SDS databases with over 14 million documents available in 25 languages. With SDS Manager, employees can easily access Safety Data Sheets directly from their mobile devices by scanning...
    See Software
  • Innoslate
    Innoslate
    SPEC Innovations’ flagship model-based systems engineering solution can help your team reduce time-to-market, cost, and risk on even some of the most complex systems. This cloud or on-premise application uses a modern web browser, with an intuitive graphical user interface. Innoslate’s full...
    See Software
  • HSI Donesafe
    HSI Donesafe
    HSI Donesafe is a no-code, cloud-based EHS software that simplifies safety, compliance, and risk management, transforming complex processes into user-friendly workflows. Trusted by industries worldwide, Donesafe allows organizations to track, manage, and report on essential EHS functions from...
    See Software
  • QBench
    QBench
    The modern, flexible, easy-to-use LIMS. QBench enables our customers to get a LIMS up and running faster. Automate your entire lab with our developer-friendly API, Inventory Management, Customer Portal, Billing, and Quality Management System modules. QBench is a cloud-based Laboratory...
    See Software
  • Lockbox LIMS
    Lockbox LIMS
    A sample tracking, test result capture, and inventory management cloud LIMS for life science research, biotech/NGS, and industrial QC labs. Includes regulatory support for CLIA, HIPAA, Part 11, and ISO 17025. Nothing is more critical to a lab’s success than the quality, security, and...
    See Software
Report inappropriate content
Ditto Edge Server is a lightweight standalone server for resource-constrained edge environments, based on the core Ditto Edge SDK. Icon
Ditto Edge Server is a lightweight standalone server for resource-constrained edge environments, based on the core Ditto Edge SDK.

With Ditto Edge Server, you can join devices as small as a Raspberry Pi to a local mesh network and synchronize data across edge environments.

Ditto's Edge SDK is the only thing your edge devices need to ensure your application is operational in any environment, regardless of network conditions.
Learn More
Recommended Projects
  • BioNLP-Corpora
    BioNLP-Corpora is a repository of biomedically and linguistically annotated corpora and biomedical data sources. There are many resources available in separate packages in this project.
  • AutoDock Software in Parallel with GPUs
    Using the CUDA API this project modifies the AutoDock software to run in parallel on NVIDIA GPUs. Users will be able to download and compile the code and use AutoDock on CUDA capable Graphics Cards. Autodock is located at http://autodock.scripps.edu/
  • SpectralWorks
    View, manipulate, analyze (LS fit, SVD, FT), and make figs of, spectra
  • Hybrid Stochastic Sim for Supercomputers
    Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of species/reactions. Many features included (see Home Page). An easy-to-use GUI (Matlab req) is included.
  • TUBE
    TUBE
    Generating structures of nanotubes and some fullerenes
Top Searches
  • chemistry reaction simulation
  • python reaction
Related Business Categories
  • Life Sciences
  • Simulation
  • Chemical
  • Bioinformatics
SourceForge
  • Create a Project
  • Open Source Software
  • Business Software
  • Top Downloaded Projects
Company
  • About
  • Team
  • SourceForge Headquarters
    1320 Columbia Street Suite 310
    San Diego, CA 92101
    +1 (858) 422-6466
Resources
  • Support
  • Site Documentation
  • Site Status
  • SourceForge Reviews
SourceForge logo
© 2026 Slashdot Media. All Rights Reserved.
Terms Privacy Privacy Choices Advertise
Auth0 Logo