• Join/Login
  • Business Software
  • Open Source Software
  • For Vendors
  • Blog
  • About
  • More
    • Articles
    • Create
    • SourceForge Podcast
    • Site Documentation
    • Subscribe to our Newsletter
    • Support Request
SourceForge logo
For Vendors Help Create Join Login
SourceForge logo
Business Software
Open Source Software
SourceForge Podcast
Resources
  • Articles
  • Case Studies
  • Blog
Menu
  • Help
  • Create
  • Join
  • Login
  • Home
  • Open Source Software
  • Scientific/Engineering
  • Bio-Informatics
  • seqMINER
seqMINER

seqMINER

Status: Beta
Brought to you by: ytsquall
1 Review
Downloads: 1 This Week
Last Update: 2021-08-02
Download
Share This
Email in envelope

Get an email when there's a new version of seqMINER

Next
  • Summary
  • Files
  • Reviews
  • Support
  • Wiki

A genome wide mapping data interpretation platform for NGS(ChIPSeq). A tutorial can be found at: http://genomeast.igbmc.fr/wiki/doku.php?id=training:seqminer

Project Activity

See All Activity >

{{ this.obj.activity_extras.summary }}
{{/each}}

Categories

Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

Follow seqMINER

seqMINER Web Site

Other Useful Business Software
Network Management Software and Tools for Businesses and Organizations | Auvik Networks Icon
Network Management Software and Tools for Businesses and Organizations | Auvik Networks

Mapping, inventory, config backup, and more.

Reduce IT headaches and save time with a proven solution for automated network discovery, documentation, and performance monitoring. Choose Auvik because you'll see value in minutes, and stay with us to improve your IT for years to come.
Learn More
Rate This Project
Login To Rate This Project

User Ratings

5.0 out of 5 stars
★★★★★
★★★★
★★★
★★
★
1
0
0
0
0
ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

User Reviews

Filter Reviews:
All
  • All
  • ★★★★★
  • ★★★★
  • ★★★
  • ★★
  • ★
  • ytsquall Posted 2012-07-20
    seqMINER: an integrated ChIP-seq data interpretation platform. Nucleic Acids Res. 2011 Mar Tao Ye, Arnaud R. Krebs, Mohamed-Amin Choukrallah, Celine Keime, Frederic Plewniak, Irwin Davidson, and Laszlo Tora
Read more reviews >

Additional Project Details

Languages

English

Intended Audience

Science/Research

User Interface

Java Swing

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2010-06-04
Similar Business Software
  • OmnibusX
    OmnibusX
    In the world of biological data science, navigating vast and complex datasets can be a daunting task. Our software toolkit is designed to empower you by accelerating analysis, promoting accessibility, and providing comprehensive visualization tools to help you make sense of these intricate...
    See Software
  • GenomeBrowse
    GenomeBrowse
    This free tool delivers stunning visualizations of your genomic data that give you the power to see what is occurring at each base pair in your samples. GenomeBrowse runs as a native desktop application on your computer. No longer do you have to sacrifice speed and interface quality to obtain a...
    See Software
  • OmicsBox
    OmicsBox
    OmicsBox is a leading bioinformatics solution that offers end-to-end data analysis of genomes, transcriptomes, metagenomes, and genetic variation studies. The application is used by top private and public research institutions worldwide and allows researchers to easily process large and complex...
    See Software
  • Genome Analysis Toolkit (GATK)
    Genome Analysis Toolkit (GATK)
    Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK...
    See Software
  • Bioconductor
    Bioconductor
    The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists. Resources to maximize the potential of Bioconductor. From basic functionalities to...
    See Software
  • ROSALIND
    ROSALIND
    Generate greater return on research and improve team productivity. Extend private and public data across teams with interactive data visualization. Rosalind is the only multi-tenant SaaS platform designed for scientists. Analyze, interpret, share, plan, validate, and generate new hypotheses....
    See Software
Report inappropriate content
Network Management Software and Tools for Businesses and Organizations | Auvik Networks Icon
Network Management Software and Tools for Businesses and Organizations | Auvik Networks

Mapping, inventory, config backup, and more.

Reduce IT headaches and save time with a proven solution for automated network discovery, documentation, and performance monitoring. Choose Auvik because you'll see value in minutes, and stay with us to improve your IT for years to come.
Learn More
Recommended Projects
  • AdamaJava
    As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the wiki: http://sourceforge.net/p/adamajava/wiki/Home/
  • MeV
    Please use WebMeV for all NGS and Microarray analysis: http://mev.tm4.org/
  • MiModD
    MiModD
    Mutation Identification in Model Organism Genomes using Desktop PCs
  • GenomeRunner
    GenomeRunner
    Annotation and enrichment of Next-Gen sequencing data
  • scalpel
    Genetic variants discovery tool
Top Searches
  • seqminer
Related Business Categories
  • Bioinformatics
SourceForge
  • Create a Project
  • Open Source Software
  • Business Software
  • Top Downloaded Projects
Company
  • About
  • Team
  • SourceForge Headquarters
    1320 Columbia Street Suite 310
    San Diego, CA 92101
    +1 (858) 422-6466
Resources
  • Support
  • Site Documentation
  • Site Status
  • SourceForge Reviews
SourceForge logo
© 2026 Slashdot Media. All Rights Reserved.
Terms Privacy Privacy Choices Advertise
Auth0 Logo