crossmap

convert genome coordinates betweeen assemblies

Brought to you by: mrfoxx, zbfish

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Last Update: 2025-06-25

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CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format.

Features

Genome coordinates conversion between assembiles
Support BAM, SAM, BigWig, Wiggle, BED, VCF input format
Run on Linux, Mac OS

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License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Operating Systems

BSD, Linux, Mac

Intended Audience

Education, Engineering, Science/Research

Programming Language

C, Python

Related Categories

Python Bio-Informatics Software, C Bio-Informatics Software

Registered

2013-10-09

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