Seal

A toolkit for distributed processing of HT sequencing data.

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Seal is a Hadoop-based distributed short read alignment and analysis toolkit. Currently Seal includes tools for: read demultiplexing, read alignment, duplicate read removal, sorting read mappings, and calculating statistics for empirical base quality recalibration. Seal scales, easily handling TB of data.

Features

short read alignment (based on BWA)
duplicate read identification
sort read mappings
calculate empirical base quality recalibration tables
fast, scalable, reliable (runs on Hadoop)

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Registered

2011-04-20

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