Systems Biology Format Converter Code

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Commit [r731] Maximize Restore History

corrected linux scripts to include the paxtools jar. Put back the creation of BioPAX EntityReferences that will old the annotations

Authored by: niko-rodrigue 2018-05-25

Browse code at this revision

Parent: [r730]

Child: [r732]

changed	/trunk/build.xml
changed	/trunk/lib/sbfc-1.3.8-SNAPSHOT.jar
changed	/trunk/sbfConverter.sh
changed	/trunk/sbfConverterGUI.sh
changed	/trunk/sbfConverterList.sh
changed	/trunk/sbfModelList.sh
changed	/trunk/sbml2biopax.sh
changed	/trunk/sbml2biopax3.bat
changed	/trunk/sbml2biopax3.sh
changed	/trunk/sbml2biopax_gsoc16.sh
changed	/trunk/src/org/sbfc/converter/sbml2biopax/SBML2BioPAX_Tramy.java
changed	/trunk/src/org/sbfc/converter/sbml2biopax/SBML2BioPAX_l2.java
changed	/trunk/src/org/sbfc/converter/sbml2biopax/SBML2BioPAX_l3.java
changed	/trunk/src/org/sbfc/converter/sbml2biopax/arman/SBML2BioPAXUtilities.java

/trunk/build.xml Diff Switch to side-by-side view

/trunk/lib/sbfc-1.3.8-SNAPSHOT.jar

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/trunk/sbfConverter.sh Diff Switch to side-by-side view

/trunk/sbfConverterGUI.sh Diff Switch to side-by-side view

/trunk/sbfConverterList.sh Diff Switch to side-by-side view

/trunk/sbfModelList.sh Diff Switch to side-by-side view

/trunk/sbml2biopax.sh Diff Switch to side-by-side view

/trunk/sbml2biopax3.bat Diff Switch to side-by-side view

/trunk/sbml2biopax3.sh Diff Switch to side-by-side view

/trunk/sbml2biopax_gsoc16.sh Diff Switch to side-by-side view

/trunk/src/org/sbfc/converter/sbml2biopax/SBML2BioPAX_Tramy.java Diff Switch to side-by-side view

/trunk/src/org/sbfc/converter/sbml2biopax/SBML2BioPAX_l2.java Diff Switch to side-by-side view

/trunk/src/org/sbfc/converter/sbml2biopax/SBML2BioPAX_l3.java Diff Switch to side-by-side view

/trunk/src/org/sbfc/converter/sbml2biopax/arman/SBML2BioPAXUtilities.java Diff Switch to side-by-side view