Implementation of FoldMark: Safeguarding Protein Structure Generative Models with Distributional and Evolutionary Watermarking
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Updated
Jul 30, 2026 - Python
Implementation of FoldMark: Safeguarding Protein Structure Generative Models with Distributional and Evolutionary Watermarking
Safety concept for Global Health Engineering
🧬 Plataforma de orquestração translacional bioinformática — FastAPI, PostgreSQL, Redis, MCP, Prefect
Calibrated, cost-aware DBTL orchestration for biology with external trust routing, fail-closed biosafety screening, and reproducible evaluation.
Safety-facing carve-out: PBS-stratified abstention/calibration on 5 biology domains (CT/ADMET/SC-Perturbation/ClinVar/GWAS) × 2 providers × 2 prompt conditions
Offline, zero-dependency optimizer that designs the leanest aseptic protocol for a target sterility level — pricing in correlated barrier failures and over-treatment. One HTML file.
Open-ended benchmark and evaluation framework for biological reasoning in LLMs: 12 components, 400 tasks, deterministic dataset release.
Offline-first sterility-assurance toolkit — compute log reductions and SAL, get a PASS/FAIL verdict, and keep an exportable cycle log. Runs in any browser, no install.
Deterministic synthetic fixtures and hard-gate scoring for agentic biosafety safeguard routing.
Biological dual-use content classifier using Constitutional Classifiers methodology — biosafety constitution, synthetic data pipeline, DeBERTa-v3-base classifier
Staged quarantine and release-observation planner for engineered organisms.
Mapping the distribution of high-containment laboratories and projected climate-related hazards
LabCraft-Eval: a stochastic Inspect AI environment for evaluating AI agents on benign molecular-microbiology protocols, with deterministic four-axis trajectory scoring.
Empirical dual-use risk assessment of protein language models (ESM-2) and structure-based design tools (ProteinMPNN)
AsepSys — an offline, single-file tool that computes a minimum-sufficient, most-selective, barrier-optimized asepsis protocol and logs verification. Sterility math meets aseptic technique in one engine.
Public runtime library for microorganism risk-reference data derived from NITE/MRINDA.
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