Aquileo | Recent changes to bugs

Aquileo | Resource bug exposed by MultiAnnotatorDisplay

2014-08-19T12:30:17.847000Z

MultiAnnotatorDisplay fails with errors if the multi-annotated layer points to an ontology that ontology is not loaded resulting in many complaints about inability to resolve links. Following the reliability example at http://groups.inf.ed.ac.uk/nxt/nxtdoc/docreliability.xml for example will fail.

Aquileo | NTranscriptionView incompatible with new Java version

2012-10-18T18:34:21Z

Use of TreeSet in NTranscriptionView where the comparator is not defined causes a ClassCastError. That's because if the comparator is not defined, TreeSet assumes the elements you add will implement Comparable, but gui.transcriptionviewer.DefaultTransToAnnoMap does not. As far as I can see in those cases we could be using HashSet (and on a very quick test it looks OK and fixed the bug), but it needs more work to confirm. This has only manifested on Win7 systems, but I don't think that's the issue. Here's the exception:

java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at net.sourceforge.nite.nxt.GUI$RunProg.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: java.lang.ClassCastException:
net.sourceforge.nite.gui.transcriptionviewer.DefaultTransToAnnoMap cannot be cast to java.lang.Comparable
at java.util.TreeMap.compare(Unknown Source)
at java.util.TreeSet.add(Unknown Source)
at net.sourceforge.nite.gui.transcriptionviewer.NTranscriptionView.<init>(Unknown Source)
at net.sourceforge.nite.gui.util.AbstractCallableTool.setupTranscriptionView(Unknown Source)

Aquileo | Element name oddness

2012-10-17T10:59:18Z

The query language breaks when you have elements named "e"! I've not found any other eelement names that cause problems but a query like
($e e) will give you a syntax error in spite of being perfectly valid. Thanks to Ian Hughson for finding!

Aquileo | Layer type error

2012-06-26T17:04:11Z

If a structural layer appears in a hierarchy *below* a time-aligned layer, its layer type is TIMED instead of STRUCTURAL.

There is a workaround of setting the inherits-time attribute of the layer to be false, though that is rather counter-intuitive.

Should return structural unless the structural layer has children from which it can inherit.

Aquileo | some loads can fail when multiple observations are loaded

2011-09-26T15:51:32Z

Some checks for loading related layers are insufficient to deal with the case where multiple observations are loaded at once - for certain types of load the fact a layer is loaded is not recorded along with the observation name, so the layer will only be loaded for one of the multiple observations.

Error occurs in loadRequestedChildren and loadRequestedParent only.

Aquileo | Time propagation fails in certain cases

2011-09-16T16:55:58Z

If a time-aligned layer has already propagated its times to a parent (structural) layer, a subsequent load of any ancestor of the parent layer will never have timings propagated to it.

Aquileo | NTextArea clearing bug

2011-05-26T16:55:42Z

Using the clear method to clear an NTextArea works, but using setText("") can cause exceptions:
Exception in thread "AWT-EventQueue-0" java.lang.IllegalStateException:
Attempt to mutate in notification
at javax.swing.text.AbstractDocument.writeLock(AbstractDocument.java:1323)
at javax.swing.text.DefaultStyledDocument.setCharacterAttributes(DefaultStyledDocument.java:348)
at net.sourceforge.nite.gui.textviewer.NTextArea.removeStyleFromChain(Unknown Source)
at net.sourceforge.nite.gui.textviewer.NTextArea.clearHighlights(UnknownSource)
at net.sourceforge.nite.gui.textviewer.NTextArea.newSelection(Unknown Source)
at net.sourceforge.nite.gui.textviewer.NTACaretListener.caretUpdate(Unknown Source)
at javax.swing.text.JTextComponent.fireCaretUpdate(JTextComponent.java:391)
at javax.swing.text.JTextComponent$MutableCaretEvent.fire(JTextComponent.java:4387)
at javax.swing.text.JTextComponent$MutableCaretEvent.stateChanged(JTextComponent.java:4409)
at javax.swing.text.DefaultCaret.fireStateChanged(DefaultCaret.java:782)
at javax.swing.text.DefaultCaret.changeCaretPosition(DefaultCaret.java:1257)
at javax.swing.text.DefaultCaret.handleSetDot(DefaultCaret.java:1153)
at javax.swing.text.DefaultCaret.setDot(DefaultCaret.java:1134)
at javax.swing.text.DefaultCaret$Handler.removeUpdate(DefaultCaret.java:1777)
at javax.swing.text.AbstractDocument.fireRemoveUpdate(AbstractDocument.java:243)
at javax.swing.text.AbstractDocument.handleRemove(AbstractDocument.java:608)
at javax.swing.text.AbstractDocument.remove(AbstractDocument.java:576)
at javax.swing.JEditorPane.setText(JEditorPane.java:1493)
at nxtAnnotation.AccuracyAnnotator$MimickingStatusDisplayComponent.update(AccuracyAnnotator.java:477)
at nxtAnnotation.AccuracyAnnotator$MimickingStatusDisplayComponent.setCycleByChildren(AccuracyAnnotator.java:472)
at nxtAnnotation.AccuracyAnnotator$3.selectionChanged(AccuracyAnnotator.java:216)
at net.sourceforge.nite.gui.textviewer.NTextArea.notifyNTASelectionListeners(Unknown Source)
at net.sourceforge.nite.gui.textviewer.NTextArea.newSelection(Unknown Source)
at net.sourceforge.nite.gui.textviewer.NTACaretListener.caretUpdate(Unknown Source)
at javax.swing.text.JTextComponent.fireCaretUpdate(JTextComponent.java:391)
at javax.swing.text.JTextComponent$MutableCaretEvent.fire(JTextComponent.java:4387)
at javax.swing.text.JTextComponent$MutableCaretEvent.mouseReleased(JTextComponent.java:4443)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
at java.awt.Component.processMouseEvent(Component.java:6289)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
...

Aquileo | media rate slider does not work

2011-01-31T16:44:09Z

In most cases and on most platforms the rate slider on the NITE Clock inteface actually has no effect on the replay speed of the media. Worse than that, it's only on the Mac platform where FMJ is used that an explicit error message is printed (only on teh console) when you try to set the rate: FMJ does not support rate changes. Investigate the problem to see if it can be solved and at the very least grey out the slider and/or give errors if rate changes will have no effect.

Aquileo | Ctrl-right-click while playing causes problems

2011-01-17T16:28:54Z

In any interface that shows media, ctrl-right-click to play a single utterance causes a problem if the media is already playing: the media player does not stop at the end of the selected utterance, and in fact can then not be stopped at all.

Aquileo | "Bad version number in .class file" when starting GUI on OSX

2010-11-01T17:52:06Z

The following terminal transcript illustrates the problem:

[max@radon:~/Downloads/nxt_1.4.4]$ java -version
java version "1.5.0_26"
Java(TM) 2 Runtime Environment, Standard Edition (build 1.5.0_26-b03-376-9M3263)
Java HotSpot(TM) Client VM (build 1.5.0_26-156, mixed mode)
[max@radon:~/Downloads/nxt_1.4.4]$ ./NXT-start-GUI.command
Exception in thread "main" java.lang.UnsupportedClassVersionError: Bad version number in .class file
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:676)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:124)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:260)
at java.net.URLClassLoader.access$100(URLClassLoader.java:56)
at java.net.URLClassLoader$1.run(URLClassLoader.java:195)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:188)
at java.lang.ClassLoader.loadClass(ClassLoader.java:317)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:280)
at java.lang.ClassLoader.loadClass(ClassLoader.java:252)
at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:375)

You can see that I have java 1.5.0_26 installed, which I believe is the most current version provided by Apple for OS X. The NXT readme file states that Java 1.4.2_05 should be sufficient to run the tools. Nonetheless, you can see that I am getting an UnsupportedClassVersionError exception, which I believe usually means that the class file was compiled with a newer java version than that of the VM trying to execute it. This occurs regardless of which java invocation I use in the .command file.