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Commits on Jun 9, 2026

• Add some mising run info

  moinfar

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  7a76410

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• Merge pull request #2 from theislab/update_june_2026

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  moinfar

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  699a3b1

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• update deps

  moinfar

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  405afe8

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• add michigan code

  moinfar

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  57c26c9

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• update readme

  moinfar

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• update gitignore

  moinfar

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  adbb0b4

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• Add missing notebooks

  moinfar

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  b3d013c

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• Add missing notebook

  moinfar

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  c018b7e

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• remove legacy files

  moinfar

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  4e1e779

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• update eval runs

  moinfar

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  c39e4f3

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• remove unused code

  moinfar

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  70edcc4

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• Add notebooks after running

  moinfar

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  14c7c3f

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Commits on Jun 8, 2026

• update analysis notebooks

  moinfar

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  d8c4946

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• update gitignore

  moinfar

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Commits on May 15, 2026

• update reproducibility codes

  moinfar

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  26b1abd

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• Add some notebooks (draft)

  moinfar

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  11a2df5

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Commits on Apr 28, 2026

• Update running pipeline

  moinfar

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  306e7f2

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Commits on Sep 23, 2025

• Add minor missed info

  moinfar

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  3781e1d

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• Add minor missed info

  moinfar

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Commits on Jul 1, 2025

• Update according to paper changes

  moinfar

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  8c545ec

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• Update according to paper changes

  moinfar

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Commits on Nov 12, 2024

• Fix typo in README.md

  moinfar

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  79b6c90

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• Remove unused requirements.txt

  moinfar

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  3bdc21b

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• Add missing run config for scATAC-seq example

  moinfar

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  11eb025

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• Add output for notebok checking the effect of latent dimensions on all datasets

  moinfar

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  b94a7c4

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• Add output for notebok checking the effect of latent dimensions on Daniocell dataset

  moinfar

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  85f06c3

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• Add output for notebok checking the effect of latent dimensions on immune dataset

  moinfar

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  18a010c

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• Add outputs for CRISPR screen dataset visualization

  moinfar

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  fecd3fb

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• Add outputs for developmental pancreas analysis

  moinfar

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  945a0bc

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• Add outputs for hlca analysis

  moinfar

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  90d9a30

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• Add outputs for immune analysis

  moinfar

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  9bdcee5

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• Add outputs for evaluation notebooks

  moinfar

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  02b9b3b

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• Reorganize all files in the repository

  moinfar

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  33e829a

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Commits on Nov 7, 2024

• Add reproducibility code

  moinfar

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  dd529ac

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Commits on Nov 5, 2024

• first commit

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