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Commits on Oct 18, 2025

• code format

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Commits on Apr 26, 2025

• move SingleCellExperiment to Import

  

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  c274faa

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• fix R CMD check note

  

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• Docs

  

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• add `readH5AD`

  

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• quickMNN: add pca_name

  

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Commits on Apr 25, 2025

• rename BNPARAM to bnparam

  

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Commits on Apr 24, 2025

• always use single thread for `HDF5Matrix`

  

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  0e5dc35

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Commits on Apr 23, 2025

• fix x not found

  

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  2d9de2c

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• use single thread by default

  

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• use `DelayedArray` method

  

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Commits on Mar 24, 2025

• remove duplicated function

  

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  9a50de7

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• docs update

  

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  2f8274f

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• fix docs

  

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  2c3bb86

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• new function: clusterGraph

  

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  9d0e7f2

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Commits on Mar 23, 2025

• use new_dimred to add attributes

  

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• use new_dimred to create dimred with attributes

  

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• new utils to create compatible reduced.dim: new_dimred

  

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• logNormCounts: use delayed operations for DelayedArray

  

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Commits on Mar 22, 2025

• make methods for SummarizedExperiment

  

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• add librarySizeFactors

  

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Commits on Mar 4, 2025

• use standalone scripts

  

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• add Seurat method

  

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Commits on Feb 26, 2025

• fix docs

  

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  8f71d59

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• new function scenic

  

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  ea0e48e

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Commits on Feb 21, 2025

• add rownames to the output

  

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Commits on Feb 20, 2025

• make argument consistent

  

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  a24a58c

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• restore the RNGkind

  

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  417e48b

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• fix restore seeds

  

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  72caf50

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• remove unused code

  

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  f3b58fd

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• tidy-off code with a helper function restore_rng_hook()

  

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Commits on Feb 19, 2025

• fix docs

  

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  0558c12

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• update

  

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• check cell names are unique

  

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• add infercnv

  

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