 Rezarta Islamaj Doğan's Research Page |
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Rezarta Islamaj Doğan, PhD
Staff Scientist
NCBI, NLM, NIH
8600 Rockville Pike
Building 38A,6S-614E
Bethesda, MD 20894
Tel: (1) (301) 435 8769
Email: Rezarta.Islamaj AT nih.gov
PhD, Computer Science,
University of Maryland at College Park, USA, 2007
| | Online CV |
Research Interests:
- Construction of linguistic resources to support biological text mining
- Building tools that facilitate information retrieval and knowledge extraction from biomedical literature
- Machine learning, data mining, feature generation
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Selected Publications:
NCBI Disease Corpus: A Resource for Disease Name Recognition and Concept Normalization.
with Robert Leaman and Zhiyong Lu
J Biomed Inform 2014. PubMed-link
Author name disambiguation for PubMed
with Wanli Liu, Sun Kim, Donald C. Comeau, Won Kim, Lana Yeganova, Zhiyong Lu andW. John Wilbur
Journal of the Association for Information Science and Technology 2014. JASIST-link
DNorm: disease name normalization with pairwise learning to rank.
with Robert Leaman and Zhiyong Lu
Bioinformatics 2013. PubMed-link
BioC: a minimalist approach to interoperability for biomedical text processing.
with Don Comeau, Paolo Ciccarese, Kevin Cohen, Martin Krallinger, Florian Leitner, Zhiyong Lu, Yifan Peng, Fabio Rinaldi, Manabu Torii, Alfonso Valencia,
Karin Verspoor, Tom Wiegers, Cathy Wu, and John Wilbur.
DATABASE 2013. PubMed-link
Reports on the 2012 AAAI Fall Symposium series
with Yolanda Gil, Haym Hirsh, Narayanan Krishnan, Michael Lewis, Cetin Mericli, Parisa Rashidi, Victor Raskin, Samarth Swarup, Wei Sun, Julia Taylor and Lana Yeganova
AI Magazine Spring 2013. AI-digital
A context-blocks model for identifying clinical relationships in patient records
with Aurélie Névéol and Zhiyong Lu
BMC Bioinformatics 2011. BMC Bioinformatics-link
Click-words: Learning to Predict Document Keywords from a User Perspective
with Zhiyong Lu
Bioinformatics 2010. Article in PubMed Central
Extracting Rx Information from Clinical Narrative
with James G. Mork, Olivier Bodenreider, Dina Demner-Fushman, François-Michel Lang, Zhiyong Lu,
Aurélie Névéol, Lee Peters, Sonya E. Shooshan and Alan R. Aronson
JAMIA 2010. JAMIA-link to fulltext
Understanding PubMed® user search behavior through log analysis
with G. Craig Murray, Aurélie Névéol, and Zhiyong Lu
Database, 2009. Article in PubMed Central
Features Generated for Computational Splice-Site Prediction Correspond
to Functional Elements
with Lise Getoor, W. John Wilbur and Stephen M. Mount
BMC Bioinformatics, 2007. Article in PubMed Central
SplicePort: An Interactive Splice-Site Analysis Tool
with Lise Getoor, W. John Wilbur and Stephen M. Mount
Nucleic Acids Research, 2007.Article in PubMed Central
A Feature Generation Algorithm with Applications to Biological Sequence Classification
with Lise Getoor and W. John Wilbur
Chapter in Computational Methods of Feature Selection, Huan Liu and Hiroshi Motoda editors, 2007. SPRINGER-link
Structural footprinting in protein structure comparison: The impact of structural fragments.
with Elena Zotenko, W. John Wilbur, Diane P. O'Leary and Teresa M. Przytycka
BMC Structural Biology, 2007.Article in PubMed Central
All Publications
Revised: May14, 2012.
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